PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g102300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 716aa MW: 76332 Da PI: 7.4234 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.5e-16 | 454 | 500 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Sopim01g102300.0.1 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 500 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.45E-17 | 446 | 504 | No hit | No description |
SuperFamily | SSF47459 | 4.97E-20 | 447 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.228 | 450 | 499 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-20 | 454 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-13 | 454 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 456 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MAIGKPESGQ QKISSTSNLS SFPENDLVEL KWQNGQIVMQ GQNSSAKKST VPNNLPSSAS 60 GDRDKYTGNS STSKIGKFGL MDSMLNDMSL TVPTGELDLI QEDEGVPWLG YPADDSLQQD 120 YCAQLLPEIS GVTANEQSGQ SVFGLINKRG SSDKMIGDSH SVPVHNAVNF ERRNTSKVSP 180 SSRFSPLSSL PSQKGHASIP TLESGVSDVF SSKNSNTPLS VLGESNQSKA SAGDAKSNRI 240 QKQNMPGNRS NLLNFSHFSR PATLVKAAKL QSSTGGSNIS GSPILEAKGK KGEEKVTIGD 300 NHVSAAATEN FLTSKKDNFP HYPTNGVSSQ LESRPSGASF HDRSCQAEQS DNAFRDCSSN 360 NDNTHDHFTS AKATKDIADG ERNVEHGVAC SSVCSGSSAE RGSSDQPLNL KRKTRDNEEF 420 ECRSEDVEEE SVGIKKPCAA RGGTGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC 480 NKADKASMLD EAIEYLKTLQ LQVQIMSVGA GLCVPPMMFP MQHMHGAQMP HFSPMSLGMG 540 MGMGFGLGML EMNGRSSGYP MYPMPSVQGG HFPSPPIPAS TAYPGIAVSN RHVFAHPGQG 600 LPMSIPRASL GPLAGQPSTG AAVPMNVARE GVPVEIRGAQ PNLDSKTPVH KNSQIVQNAE 660 ASCPQNQTCS QVQATNEVLE KSAQKNDQLP DVIGSAANRL TNRTNVPGNE AGPSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 458 | 463 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010313958.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
Refseq | XP_010313963.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
Refseq | XP_010313968.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
TrEMBL | A0A3Q7EQR7 | 0.0 | A0A3Q7EQR7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g102300.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4965 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-56 | phytochrome interacting factor 3 |