PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g096370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 451aa    MW: 49496.8 Da    PI: 5.4496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g096370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-13277323455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  Sopim01g096370.0.1 277 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 323
                         799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5027212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.218273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-15276326No hitNo description
SuperFamilySSF474591.31E-17276334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16277332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-17279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEQLAVSSSP MAVAPPPVDV NQVPLGLQQM LQYVVKSQPE WWAYAIFWQT SNDDEGKNFL  60
AWGDGYFQGD GVVINNKGGG GSSSSLKSQA QSERKKVIKG IQALMDGNGD TDLVDDGDVT  120
DTEWFYVMSL ARSFSAGDGS VTGKAFGSDD FLWITGPDQF QLHYSCERAK EAQIHGIQTL  180
VSIPTSNGVF ELGSTQLIKQ NLSLVQQVKS LFLCCPPIQF LEKTISFADI GLVTGLQQDD  240
NDYKLRENSR KPHPVVAKKR GRKPKGGEED AHMAALNHVE AERQRREKLN HRFYALRSVV  300
PNVSRMDKAS LLSDAVSYIN QLKAKVDELE LQLIDHTKKP KIVTESSSAD NQSATTSSDD  360
QVIKAANPTA APEVEVKIVG TDAMIRVQSE NVDYPSAKLM IALQNLQMQV HHASISSVNH  420
LVLHDVVVRV PQGLSTEDEL RTALLTSYDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-33272129192Transcription factor MYC3
4rqw_B2e-33272129192Transcription factor MYC3
4rs9_A2e-33272129192Transcription factor MYC3
4yz6_A2e-33272129192Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230022.10.0transcription factor MYC2-like isoform X2
TrEMBLA0A3Q7EMT20.0A0A3Q7EMT2_SOLLC; Uncharacterized protein
STRINGSolyc01g096370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-81bHLH family protein