PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g096050.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 606aa MW: 67261.9 Da PI: 7.2655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 434 | 480 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Sopim01g096050.0.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 480 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.8E-55 | 48 | 236 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-18 | 433 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-13 | 433 | 484 | No hit | No description |
Pfam | PF00010 | 3.4E-10 | 434 | 480 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-18 | 434 | 491 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 436 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MVTGNMLWSG EDKAMVASVL GKEAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN 60 AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPKEAEER EVKKILNLRL DDEGQQRMRK 120 RVLQKLHMLF GGTDEDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKYLWLS 180 DALTSNLDYC ARSFLAKSAG MQTIALIPTD VGVVELGSVR SIPESLELLQ NIKSCFSSFL 240 SLVRDKQAAG IAAVPEKNEG NNPRLSNSGA VTERTDGNPK IFGHDLNSGT HFREKLAVRK 300 AEERPWDMYQ NGNRMPFVNA RNGLNPASWA QFSNVKLGKP VELYAPPTPG HNLMNGGREE 360 FRLNNFQHQK PAARMQIDFT GATSRTIVSP AHNVESEHSD VEASCKEDRA GPVDEKRPRK 420 RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ 480 KKLRDMESER ELRLGSTSRD AITSEDSPSS EIQIRGPDIN IEAANDEVIV RVSCSLETHP 540 LSRIIQIFKE AQINVVESKL SAGNGTVYHT FVIKSSGSEQ LTKEKLLAAF SSESNSLRQL 600 SPVGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 5e-29 | 428 | 490 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 415 | 423 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229991.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | M0ZH36 | 0.0 | M0ZH36_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g096050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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