PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g095630.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 337aa    MW: 37727.5 Da    PI: 5.4922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g095630.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.35.5e-27137197259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v++s+ + +++e+tY+g+H ++
  Sopim01g095630.0.1 137 EDGFSWRKYGQKDILGASHPRAYYRCTHRntqGCLATKQVQKSDANSTIFEVTYKGRHSCK 197
                         8***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-26129198IPR003657WRKY domain
SuperFamilySSF1182901.02E-23135198IPR003657WRKY domain
SMARTSM007741.2E-37136198IPR003657WRKY domain
PfamPF031065.0E-25137197IPR003657WRKY domain
PROSITE profilePS5081121.941137199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEKVKSMEKK KLINELTQGK EFVNQLKNQI IGPLASPEEC DLLIGKILST LEKSLSILNL  60
KALLLEGGIN NINNSTSSCS SISFLGSSNN NISPKSEVFD SSREKLDKNM VSKKRKKTQQ  120
WINQTSISVN GLEGPCEDGF SWRKYGQKDI LGASHPRAYY RCTHRNTQGC LATKQVQKSD  180
ANSTIFEVTY KGRHSCKVAQ SEIFSLNNQK RQKCNKKQQE EMVIFNSATP NHNAENFNII  240
TAKDEEVFTA FPFPPAPLHI ENIIEENKFF PDSSELPLYL ASPNDEFGME HMILQSSDSD  300
LTELISTPTS ISNSSFGGEG VDYEPEITFD IEEFFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18137197969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112116KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4545850.0GU454585.1 Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234530.10.0WRKY transcription factor 41
TrEMBLD3YEX50.0D3YEX5_SOLLC; WRKY transcription factor
STRINGSolyc01g095630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-38WRKY family protein