PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g095100.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 356aa    MW: 39035.9 Da    PI: 6.0427
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g095100.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31172230259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
  Sopim01g095100.0.1 172 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 230
                         79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-31162232IPR003657WRKY domain
PROSITE profilePS5081135.026166232IPR003657WRKY domain
SuperFamilySSF1182909.29E-27169232IPR003657WRKY domain
SMARTSM007743.7E-37171231IPR003657WRKY domain
PfamPF031064.4E-26173230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEDWDLHAV VRGCAASSTA AAAAATTTAT TNSCCSSFQP RQDGNFFSFQ DPFVPRFDNP  60
ISDFEELHNL YKPFFPKAQQ IPLSPQNNTN NIPISPLSVL GGLQDLSPQQ TLKQQQHIHQ  120
LNSTRLTQPK QSPLSAYGST TTSASHVQSP RPKRRKNQLK KVCQVPAEGL SSDMWSWRKY  180
GQKPIKGSPY PRGYYRCSTS KGCLARKQVE RNRSDPNMFI VTYTAEHNHP MPTHRNSLAG  240
STRQKPANSE AGTVSDSNKP TSSSPVSSPA CHSPATEKQE SSRDEREDIF EDDDDEFGSS  300
NMGLDNMEPA DDDFFEGLDE LAAQTTGDCF SDNFPGSMQL PWMSNNATTT AAGGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-24156233280Disease resistance protein RRS1
5w3x_D7e-24156233280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229932.10.0WRKY transcription factor 22
TrEMBLM0ZGA40.0M0ZGA4_SOLTU; Uncharacterized protein
STRINGSolyc01g095100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-72WRKY family protein