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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim01g095100.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 356aa MW: 39035.9 Da PI: 6.0427 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim01g095100.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.7 | 3.8e-31 | 172 | 230 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
Sopim01g095100.0.1 172 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 230
79************************9988****************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010150 | Biological Process | leaf senescence |
GO:0010200 | Biological Process | response to chitin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MEEDWDLHAV VRGCAASSTA AAAAATTTAT TNSCCSSFQP RQDGNFFSFQ DPFVPRFDNP 60 ISDFEELHNL YKPFFPKAQQ IPLSPQNNTN NIPISPLSVL GGLQDLSPQQ TLKQQQHIHQ 120 LNSTRLTQPK QSPLSAYGST TTSASHVQSP RPKRRKNQLK KVCQVPAEGL SSDMWSWRKY 180 GQKPIKGSPY PRGYYRCSTS KGCLARKQVE RNRSDPNMFI VTYTAEHNHP MPTHRNSLAG 240 STRQKPANSE AGTVSDSNKP TSSSPVSSPA CHSPATEKQE SSRDEREDIF EDDDDEFGSS 300 NMGLDNMEPA DDDFFEGLDE LAAQTTGDCF SDNFPGSMQL PWMSNNATTT AAGGV*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |