PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g094490.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 210aa    MW: 24578.1 Da    PI: 5.2944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g094490.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.94.6e-1129935128
                 NAM  35 kevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....kt 119
                         ++vd+y   ePw++ +   ++++  yf ++ +k++++ +r +r + + g+Wk +   k+vl++kg+l+g  + + +  ++++k+       
  Sopim01g094490.0.1   2 QRVDLYAEkEPWEILE--GSNTNTGYFITPLKKEKSHHTRFKRiVGEGGTWKIQDPAKKVLDEKGRLMGYVHRMKYTPATNKKAIikelFG 90 
                         5678775439****62..2345577******************777799****************************55444443222267 PP

                 NAM 120 dWvmheyrl 128
                         +W+m ey+l
  Sopim01g094490.0.1  91 EWLMMEYSL 99 
                         9******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.851124IPR003441NAC domain
SuperFamilySSF1019411.23E-129124IPR003441NAC domain
PfamPF023652.5E-41199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQRVDLYAEK EPWEILEGSN TNTGYFITPL KKEKSHHTRF KRIVGEGGTW KIQDPAKKVL  60
DEKGRLMGYV HRMKYTPATN KKAIIKELFG EWLMMEYSLY DRYVTNMKKK VVHKDFVICM  120
IKKKKKKKKK QGCDDGKKKD ENIMNEVEVN ELIDSVMEEL EEIDDDNREV DVGDDFLAAL  180
EDDRLNSEEN EISKIDANNI NLDEYDFVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107129KKKVVHKDFVICMIKKKKKKKKK
2121129KKKKKKKKK
3123129KKKKKKK
4123138KKKKKKKQGCDDGKKK
5125137KKKKKQGCDDGKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068304.11e-150uncharacterized protein LOC101262060
TrEMBLM0ZGR11e-105M0ZGR1_SOLTU; Uncharacterized protein
STRINGSolyc01g094490.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385