 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim01g094490.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 210aa MW: 24578.1 Da PI: 5.2944 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim01g094490.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 34.9 | 4.6e-11 | 2 | 99 | 35 | 128 |
NAM 35 kevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....kt 119
++vd+y ePw++ + ++++ yf ++ +k++++ +r +r + + g+Wk + k+vl++kg+l+g + + + ++++k+
Sopim01g094490.0.1 2 QRVDLYAEkEPWEILE--GSNTNTGYFITPLKKEKSHHTRFKRiVGEGGTWKIQDPAKKVLDEKGRLMGYVHRMKYTPATNKKAIikelFG 90
5678775439****62..2345577******************777799****************************55444443222267 PP
NAM 120 dWvmheyrl 128
+W+m ey+l
Sopim01g094490.0.1 91 EWLMMEYSL 99
9******87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MQRVDLYAEK EPWEILEGSN TNTGYFITPL KKEKSHHTRF KRIVGEGGTW KIQDPAKKVL 60
DEKGRLMGYV HRMKYTPATN KKAIIKELFG EWLMMEYSLY DRYVTNMKKK VVHKDFVICM 120
IKKKKKKKKK QGCDDGKKKD ENIMNEVEVN ELIDSVMEEL EEIDDDNREV DVGDDFLAAL 180
EDDRLNSEEN EISKIDANNI NLDEYDFVI*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 107 | 129 | KKKVVHKDFVICMIKKKKKKKKK |
| 2 | 121 | 129 | KKKKKKKKK |
| 3 | 123 | 129 | KKKKKKK |
| 4 | 123 | 138 | KKKKKKKQGCDDGKKK |
| 5 | 125 | 137 | KKKKKQGCDDGKK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
