PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g090790.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 465aa    MW: 50614.6 Da    PI: 7.079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g090790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15288333555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Sopim01g090790.0.1 288 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 333
                         9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-19281350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-17288337No hitNo description
Gene3DG3DSA:4.10.280.102.2E-18288342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-18289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNQCVPSWDL DDSTVPRKNL IQTQSNSLAV DVPSLDYEVA ELTWENGQLA MHGLGPPRAN  60
NKPISSYGGT LESIVNQATR CNDDVPLHLH GKSTVDRNKQ SGDEVVPWFN NHNAVAYAPP  120
ATGLVAMTKD ALVPCSRNTS NSDNQRSVHV PGIDGSTHVG SCSGATNSRD WTVAPRMRVR  180
PTRREWSSRA DMISVSGSET CGGDSRQLTV DTFDREFGTT MYTSTSMGSP ENTSSDKQCT  240
NRTGDDHDSV CHSRDQKEGG DDEDDNDNKK GSKNSSSSTK RKRAAAIHNQ SERKRRDKIN  300
QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVHMMS RMNMSPAMML PLAMQQQLQM  360
SMMGMGMGMG MGMGVAGVFD INNLSRPNIP GLPSFLHPSA AFMQPITSWD NSNSAPSPPS  420
AAMPDPLAAL LACQSQPINM DAYSRMAALY LQFQQPPTGS GPKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280295RKRAAAIHNQSERKRR
2291296ERKRRD
3292297RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229781.10.0transcription factor UNE10
TrEMBLA0A3Q7EJW50.0A0A3Q7EJW5_SOLLC; Uncharacterized protein
STRINGSolyc01g090790.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-82bHLH family protein