PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g087240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YA | ||||||||
Protein Properties | Length: 304aa MW: 33180.7 Da PI: 8.8244 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.6 | 1.5e-31 | 145 | 201 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+k +k+rkpylheSRh+hA+rR+Rg+gGrF Sopim01g087240.0.1 145 EEPVYVNAKQYHGILRRRQIRAKAELERKA-IKARKPYLHESRHQHAMRRARGTGGRF 201 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.4E-36 | 143 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.238 | 144 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.4E-27 | 146 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-24 | 147 | 169 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 149 | 169 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.0E-24 | 178 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MPTIAKHDGR QLETGLRITS LSTTQMQPWW HGYGDNTMPL ASENAVAQEK SEGGNQDKET 60 KALAMESGSD GNNEQYKQHL KHFAPTTAAI MAEQQKELTG HSAMLASYPY PDMQYGGMMT 120 YGAPVHPHLF EIHHARMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL ERKAIKARKP 180 YLHESRHQHA MRRARGTGGR FLNTKKLNDM DCTPTETQKY GATIATHSGN SSGSGSSDQG 240 GKEGSTVQDM HKGHSQSFTT GNGHGSSVYF SASSGSEQGN GHYGHGSWSL LVNQASQGAA 300 SSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-20 | 145 | 205 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316048.1 | 0.0 | nuclear transcription factor Y subunit A-9 | ||||
Refseq | XP_019068752.1 | 0.0 | nuclear transcription factor Y subunit A-9 isoform X1 | ||||
Swissprot | Q945M9 | 9e-39 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A3Q7EJE8 | 0.0 | A0A3Q7EJE8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g087240.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11232 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 1e-39 | nuclear factor Y, subunit A9 |
Publications ? help Back to Top | |||
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