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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopim01g087030.0.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
C3H |
| Protein Properties |
Length: 361aa MW: 40999.9 Da PI: 8.4868 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim01g087030.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21 | 5.9e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++++ G C yG+rC++ H+
Sopim01g087030.0.1 34 VCTYYQK-GLCAYGNRCRYRHV 54
5******.***********997 PP
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| 2 | zf-CCCH | 17.6 | 6.9e-06 | 141 | 163 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ a+ G C++ ++C+++Hg
Sopim01g087030.0.1 141 RSICS-LAAAGKCPREEQCPYIHG 163
56788.999**************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.634 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.0E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.13E-6 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.671 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0011 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.16E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-4 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.798 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.64 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.83E-12 | 198 | 271 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 2.1E-10 | 200 | 266 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 3.49E-4 | 206 | 266 | No hit | No description |
| Pfam | PF00097 | 2.1E-7 | 207 | 264 | IPR018957 | Zinc finger, C3HC4 RING-type |
| SMART | SM00184 | 2.8E-7 | 207 | 264 | IPR001841 | Zinc finger, RING-type |
| PROSITE profile | PS50089 | 12.593 | 207 | 265 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 231 | 240 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 13.441 | 294 | 323 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.18 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MSRRVLCKFF VNGACLKGEY CEFSHHWKDP PNNVCTYYQK GLCAYGNRCR YRHVKVSEQH 60
SLPSSSAPAQ HLFSASPPTT LSPGMLADGT GILSGISSEY LASGRPFYPP NQPVWSENSE 120
HHDAAVIDNI VELKRMNPAD RSICSLAAAG KCPREEQCPY IHGDLCPICA KNCLHPFRPQ 180
EREEHIRICE KRQKRLELLK HSQEIECSVC LERVLSKTTA AERKFGILFE CDHPFCISCI 240
RNWRSGTPSS GVDINSTFRT CPICRKLSYF VIPSVTWFST KEEKQIILDS YKAKLRSIDC 300
KHYDFGNGTC PFGNSCFYKH QYRDGHLEEV VPRHLGHENG RTLIAKNIRL SDLLGNLRRR 360
*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Sahi VP, et al.
A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
Plant Signal Behav, 2012. 7(3): p. 375-81
[PMID:22499205] - Wadekar HB,Sahi VP,Morita EH,Abe S
MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
Planta, 2013. 237(4): p. 1083-95
[PMID:23262670]
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