PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g081100.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 474aa    MW: 53190 Da    PI: 5.3063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g081100.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14269316254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + Er+RR ++N+++  Lr+++P++      K++ a+i++ A++YI++L
  Sopim01g081100.0.1 269 ETKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIDYINEL 316
                         689*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-15263330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-12268318No hitNo description
PfamPF000108.4E-12269316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13270326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MYVEESVCYD PATHHVQHEG LTEDVFVIQE HTYHNNNDSS QQDVAVAAAA AALEIEFQHQ  60
LNLEMEQCYN NNNNNNTHNN NNNIVNEGLS CDQANWGEMN FPPYQNQQHN DNGNSNNNFH  120
QQDFSNPISE TPYLTTPDLL NMFPLPRCTQ SSLLPQKSPN LLTSLGLIGD IDGGGASTSS  180
AICDPSSLLL PLNLPPQPPL LRELFHSFPH GYGLRNLRSN NNTSFFNGLE ETDQGLYQEN  240
GETRPFQNGI FEFSGGMNDI AKNRDGIKET KHFATERQRR VHLNDKYKAL RSMVPNPSKN  300
DRASIVKDAI DYINELKRGV NELKLMAEKK RCNKDRIKRQ KTEGGTTISM DGSDAKQIMD  360
EVEQSYNGNS LRSSWLQRRS KNTEVDVRIV DDEVTVKLVQ QKRINCLFSA SKVLDDLQLD  420
LHHVAGGLIG DYYSFLFNSK ISEGSTVYAS AIAKKLIEVV DIQYAAIAPT NSY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323236.10.0transcription factor bHLH91-like
TrEMBLM0ZNJ40.0M0ZNJ4_SOLTU; Uncharacterized protein
STRINGSolyc01g081100.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-72bHLH family protein