PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g081090.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 393aa MW: 44489 Da PI: 6.4256

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g081090.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	9.8e-11	196	241	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + E++RR + ++f+ Lr+l+P++ K++ a+i A+ YI +L Sopim01g081090.0.1 196 KHHASEKQRRVHFSDKFQALRTLIPNP-----SKNNRATIIADAIGYIDEL 241 7999********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.614	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-13	195	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.42E-8	196	242	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-13	196	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-8	196	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-6	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MYASQSLSFH PTSDQEDEKS FVQNHIAASG FVELQQQQQQ FHSSENNLNM QLEFGHDSNN 60 TRFHPNWEEI SFNPYNNQQL SYPISNPSLG LLGGFHQRTE LASTSTNLFY EPPQMNMPLN 120 LCTPQSSLFK ELFHLSPHGS SYGLGSSGTG SLFSLGHDQE EVTGNLYHDG SFHELTGDMM 180 INSAAIKKRI LGKDIKHHAS EKQRRVHFSD KFQALRTLIP NPSKNNRATI IADAIGYIDE 240 LKMRVNELKV QVDIKKERIK RRRSMVEEYG AVIMEDNQDD QQVMMNKSTN WHHQIKSSKN 300 SNTEVDVRIM EDEVIVKFVQ HKQMLKGVNC LLLVSKALDE LQLDLQHVAG GLIGDHYSYL 360 LNSKICEGCT VYASVIANKV IDVLDKEHAD IN*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MYASQSLSFH PTSDQEDEKS FVQNHIAASG FVELQQQQQQ FHSSENNLNM QLEFGHDSNN  60
TRFHPNWEEI SFNPYNNQQL SYPISNPSLG LLGGFHQRTE LASTSTNLFY EPPQMNMPLN  120
LCTPQSSLFK ELFHLSPHGS SYGLGSSGTG SLFSLGHDQE EVTGNLYHDG SFHELTGDMM  180
INSAAIKKRI LGKDIKHHAS EKQRRVHFSD KFQALRTLIP NPSKNNRATI IADAIGYIDE  240
LKMRVNELKV QVDIKKERIK RRRSMVEEYG AVIMEDNQDD QQVMMNKSTN WHHQIKSSKN  300
SNTEVDVRIM EDEVIVKFVQ HKQMLKGVNC LLLVSKALDE LQLDLQHVAG GLIGDHYSYL  360
LNSKICEGCT VYASVIANKV IDVLDKEHAD IN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229579.1	0.0	transcription factor bHLH91-like
TrEMBL	M1DCN2	0.0	M1DCN2_SOLTU; Uncharacterized protein
STRING	Solyc01g081090.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06170.2	4e-48	bHLH family protein