PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g080670.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 761aa    MW: 85287.2 Da    PI: 6.3835
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g080670.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.82.4e-36126203178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv++Cead+se+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++
  Sopim01g080670.0.1 126 RCQVPDCEADISELKGYHKRHRVCLRCANATSVVLDGHSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 203
                         6*************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-27123188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.376124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-33125205IPR004333Transcription factor, SBP-box
PfamPF031107.1E-27127201IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MISSLLSGDD PAASSNFDWS DLLDFDLHEQ LNISFDDPLH QEQQPETEFV APVIPSSEDS  60
PHSQDTDAGR IRKRDPRMAC SNFLAGRIPC ACPELDEKME EEEMAGIGPG KKRARTVRAS  120
AGAGARCQVP DCEADISELK GYHKRHRVCL RCANATSVVL DGHSKRYCQQ CGKFHILSDF  180
DEGKRSCRRK LERHNNRRRR KATDTSKTSA EKESQQLTTA DDVSGDDDIV KDNTCMGSQL  240
GEKEILLESE GHVPICSTQG IQNNHSDSFT ASGETQVDAE KENYKNSHSP SYYDNKSALS  300
SVCPTGRISF KLYDWNPAEF PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TVFVAMPTFK  360
WGKLLEDPAA HLYELIASPG NMLRGRGSFL IYLNNMVFRV TKGENSVVKV KLKGPAPKLM  420
SIYPTCFEAG KPMEFFACGS NLMQPRFRFL VSFGGRYLGN DINVVPSDCK YEGDSSSTEH  480
QLLKIHVPRT EADLFGPAFV EVENESGLSN FIPILIAEKD ICAEMKEIQR KFCSGGSECT  540
AVCSPCEAST SRKSEFSEFM LDVAWLLREP SSENVQILAS VQMQRFNYLL NILMESQSTI  600
ILERVLSYFE NIVKRNMLAG ITDADMTLFQ KNILEKNILL KERLHLKEYF AGDSGQIMQE  660
LPNLQDTAVP HKHNIEFGPT YWELTSTVPL LDAELPLRVK EQQSGKSCGF LVRKTLLTSR  720
TLVFVISGFA LCLGLCATFL HPRKVGDIAM TIRRCLFDKT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-45122204183squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187199RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323003.10.0squamosa promoter-binding-like protein 7 isoform X2
TrEMBLA0A3Q7EHP40.0A0A3Q7EHP4_SOLLC; Uncharacterized protein
STRINGSolyc01g080670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7