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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g079870.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28475.3 Da PI: 6.149 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.6 | 2.4e-55 | 80 | 183 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdi Sopim01g079870.0.1 80 QLQTFWANQyqeIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDI 170 89******99999****************************************************************************** PP NF-YC 89 fdflvdivprdel 101 fdflvdivpr++l Sopim01g079870.0.1 171 FDFLVDIVPREDL 183 **********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.08E-33 | 69 | 174 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-22 | 102 | 165 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.7E-38 | 103 | 180 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDQHGNGQPP GIGVVTSSAP IYGAPYQANQ MAGPSPPAVS AGAIQSPQAA GLAASSAQMA 60 QHQLAYQHIH QQQQQQLQQQ LQTFWANQYQ EIEHVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVVFA RACEMFILEL TLRAWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EDLKDEVLAT IPRGTLPVGG PTEGLPFYYG MPPQSAQPIG APGMYMGKPV DQALYAQQPR 240 PYMAQPIWPQ QQQPPSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-61 | 88 | 180 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246645 | 0.0 | AC246645.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-49l1 map 1, complete sequence. | |||
GenBank | BT012948 | 0.0 | BT012948.1 Lycopersicon esculentum clone 114117R, mRNA sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233820.2 | 0.0 | CONSTANS interacting pr isoform 1 | ||||
Refseq | XP_019067327.1 | 0.0 | CONSTANS interacting protein 2b isoform X1 | ||||
Swissprot | Q8L4B2 | 3e-85 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | Q2VY17 | 1e-166 | Q2VY17_SOLLC; CONSTANS interacting protein 2b | ||||
STRING | Solyc01g079870.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-81 | nuclear factor Y, subunit C9 |