PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g079560.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 110aa    MW: 12725.4 Da    PI: 4.9005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g079560.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-12261041699
                         EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         l++p + ++++ +++ +  ++ l+  +g + W+++   r  ++++++ +GWkeF+ +n+++   ++ F +dg ++f  +v++f+k
  Sopim01g079560.0.1  26 LRVPSTLVNRMREETMG--EVLLKCGDGdKYWNITT--REDGNSMYFHGGWKEFALENHIQMTQVLFFNYDGAKTF--TVRIFDK 104
                         67888888777544433..788888777799*****..999999**************************998888..*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.47611105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1611106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1613105IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-714105IPR003340B3 DNA binding domain
PfamPF023621.3E-1025105IPR003340B3 DNA binding domain
CDDcd100175.96E-942103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSNFGGNPND ELSFYKIVLD PRMEELRVPS TLVNRMREET MGEVLLKCGD GDKYWNITTR  60
EDGNSMYFHG GWKEFALENH IQMTQVLFFN YDGAKTFTVR IFDKNGLEK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-139HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229559.32e-77B3 domain-containing protein Os11g0197600-like
TrEMBLA0A3Q7F0Z85e-76A0A3Q7F0Z8_SOLLC; Uncharacterized protein
STRINGSolyc01g079560.2.18e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-13B3 family protein