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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim01g079260.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 321aa MW: 36115.2 Da PI: 6.7834 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim01g079260.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 103.9 | 8.7e-33 | 170 | 227 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK vk+s+fpr+YYrCt a+C+vkk+ver+ +dp++v++tYeg+H+h+
Sopim01g079260.0.1 170 EDGYRWRKYGQKAVKNSPFPRNYYRCTNATCNVKKRVERCFSDPSIVVTTYEGKHTHP 227
8********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009624 | Biological Process | response to nematode |
GO:0009733 | Biological Process | response to auxin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MESYKDIKME DHHPMYFIDN NGFGVTNNHS FISDYSINPS SLGFMELLGF HQDFCSVFEL 60 PKEENHYPAV CVSEEELKPP SSSSVAAAEK QKSSTTTVVA TGNVLNTPST PNCSSISSEG 120 HGDADGEVEN HDQKNTNAKQ QLKAKKTVSQ KKQKEPRFAF MTKSEVDFLE DGYRWRKYGQ 180 KAVKNSPFPR NYYRCTNATC NVKKRVERCF SDPSIVVTTY EGKHTHPSPM NTMISRPNCY 240 PINPVLPSLG TYTLPMQFNA NQSFNDNLTS SNLAINHQLD HAAFVAQGRR FCSTNEILED 300 QENDLQNLMP SAVLKHDYNR *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU056916 | 0.0 | EU056916.1 Solanum tuberosum WRKY transcription factor 4 mRNA, complete cds. |