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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim01g058540.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 325aa MW: 35485.8 Da PI: 4.5034 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim01g058540.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.6 | 2.3e-32 | 157 | 215 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDg++WrKYGqK vk+s+fprsY+rCt a+C vkk+vers+ dp++v++tYeg H+h+
Sopim01g058540.0.1 157 LDDGFRWRKYGQKAVKNSPFPRSYFRCTIATCGVKKRVERSSADPSTVITTYEGVHTHP 215
59********************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MSAFFPDESS SFFFDFPLYE TENVSSSPMR LIESMFTSPD DPITDSSSLF DLLQPPPFPP 60 PPPPPPPPPP PPPADVPLLN PSPIANTSAN SSELSSSSTD VAANDDFLQM IEMVEEQLEN 120 DEDKIEDNIQ LIPKKKKARK ERAPRFAFMT KTEIDHLDDG FRWRKYGQKA VKNSPFPRSY 180 FRCTIATCGV KKRVERSSAD PSTVITTYEG VHTHPCPITP RSSIGFYRDT IDYSGGGSIG 240 VGVGVGLGGV ASSSSLFLPE FNYQAQQQQP STYFQAPALP PINSFTTNSA QGGMLLPSTS 300 SSFGRDDGLL QDMVISQMMP KPNQ*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC246544 | 0.0 | AC246544.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67c1 map 1, complete sequence. |
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |