PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g016770.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 56aa    MW: 6290.3 Da    PI: 7.4204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g016770.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-11750247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        g ++++E+ +++d++  lG++  + Ia++++ gRt++++ ++++++
  Sopim01g016770.0.1  7 GCFSEQEECIIIDLHIILGSR-RSQIAKHLP-GRTDNEVTNFLNSF 50
                        789******************.*********.**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.045155IPR017930Myb domain
SuperFamilySSF466893.43E-8250IPR009057Homeodomain-like
SMARTSM007171.5E-5553IPR001005SANT/Myb domain
PfamPF002491.4E-7749IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12849IPR009057Homeodomain-like
CDDcd001674.26E-8946No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
MPDLKMGCFS EQEECIIIDL HIILGSRRSQ IAKHLPGRTD NEVTNFLNSF ITKKT*
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755138e-89HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232612.16e-21transcription factor MYB86-like
SwissprotP200271e-19MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A3Q7EBV84e-33A0A3Q7EBV8_SOLLC; Uncharacterized protein
STRINGSolyc01g016770.1.17e-34(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2613322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-21myb domain protein 67