PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g010240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 169aa MW: 18824.5 Da PI: 9.3643 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 58.7 | 2.5e-18 | 23 | 66 | 3 | 46 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 +++ se++Cyv+C+fCntilav +P + l+ +vtv+CGhC +l Sopim01g010240.0.1 23 TMDPSEHLCYVRCSFCNTILAVGIPCKKLLDTVTVKCGHCGNLS 66 56899************************************984 PP | |||||||
2 | YABBY | 82.7 | 1e-25 | 98 | 157 | 100 | 159 |
YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + s++++ ++p++p v++PPek+ r Psaynrf+k+eiqrika+ P+i hreafsaaakn Sopim01g010240.0.1 98 QSSSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAAHPQIPHREAFSAAAKN 157 336677788999999********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.7E-46 | 26 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.55E-7 | 105 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSSSSPNSSC LNLLESADHK INTMDPSEHL CYVRCSFCNT ILAVGIPCKK LLDTVTVKCG 60 HCGNLSFLSS RPPIQPQFFD HQPILQHQDF FNNFKKGQSS SSSEPSSPKA PFVVKPPEKK 120 HRLPSAYNRF MKDEIQRIKA AHPQIPHREA FSAAAKNVHS KYSKWDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY854800 | 1e-106 | AY854800.1 Nicotiana tabacum isolate 2 CRABS CLAW mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228849.1 | 1e-113 | protein CRABS CLAW-like | ||||
Swissprot | Q76EJ0 | 1e-59 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A3Q7EA62 | 1e-121 | A0A3Q7EA62_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g010240.2.1 | 1e-122 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5210 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 1e-54 | YABBY family protein |