PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g010130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 538aa    MW: 58963.8 Da    PI: 7.2928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g010130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09356404355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim01g010130.0.1 356 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 404
                         58*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.30E-11351408No hitNo description
SuperFamilySSF474595.76E-17351422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.497353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17354421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6356404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-10359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDMGSKNDTQ GQKRNKDATN FQSPNISLDW QLSGSNLTNA SMGMIPNSNP LVDSVFPTIW  60
DRPPNSSHLG FYGNNNANAQ ISPCIMNQHE TAAIGSVPTR GSMSWNPLNS MLKGAMFVPP  120
IPGMIPQSLA QLPADLGFIE RAARFSCFSG GNFNDMMNRP LSVPESTKPC YRGPAPTWRT  180
EEVLASSGLN SPSAVDPWKQ NIRSGVDGSK DVSLPHENKT HEQSPLKIEK KNEIFARSRD  240
EGKESVGLSG NESDEAECSG RQEEMGSAGL ESSPKSLGSR KRKKYSQGTE RDRMKRVQQL  300
PAEPDKELIE TQKGDGRLHS PSSKHGGKNS KQRSQSSDPP KEDYIHVRAR RGQATNSHSL  360
AERVRREKIS ERMKFLQDLV PGCDKVTGKA VMLDEIINYV QSLQRQVEFL SMKLSTVNPR  420
LDFNLDGVLT KDSQAGPSSA LAFSPDNMTM TYASLHGWQS GLLQSGLPGD GNYIDAFRRS  480
NTQLSSMSGG YRDPSSQVPS VWDDQLHNVV DMGFTSTAPL DCQDLSSLPP DQMKTEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279283RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228422.10.0transcription factor bHLH49-like
RefseqXP_010324838.10.0transcription factor bHLH49-like
RefseqXP_010324904.10.0transcription factor bHLH49-like
TrEMBLA0A3Q7ETA60.0A0A3Q7ETA6_SOLLC; Uncharacterized protein
STRINGSolyc01g010130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-99bHLH family protein