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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g008170.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 707aa MW: 79145 Da PI: 5.8011 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.7e-07 | 126 | 146 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C+ Gd+C F+H Sopim01g008170.0.1 126 VPCIFFQQ-GICRKGDKCGFMH 146 69******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.408 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.5E-11 | 34 | 87 | No hit | No description |
PROSITE profile | PS50103 | 11.235 | 63 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-4 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 123 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-5 | 126 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MVGPTPPSTE VPVPASAPPP APVQLSAEEE AVKSNTDCVY FLASPLTCKK GSECEYRHSD 60 MARLNPRDCW YWLNGNCLNP KCAFRHPPLD GILEAQAPTA MGFSAAYKVS VAPMPQVPYA 120 SSKQDVPCIF FQQGICRKGD KCGFMHAPSF VSNNPTQPPV STASSETSTV TKAFDGVEKS 180 VQGTKLSQTN ALKPCELSKP VIKLGIHLTK KDNTFDEKVL PSNSVINREH SRNKPPSAPP 240 TNGISFSAPN RKQQPIGIDD HNSMQYKDDE ISREPSPGFD VLVDDELRGS DYYHGEDHYG 300 GRRENVGRNE YDMGDSADYD SVADIDQDMY PDVREYDSYD RLQGQYAWEQ HIASSERIPG 360 GSAHSERRRY DTVDSPEHVE ISDLRHRLSK HRRGNGLKSV IGHDFSSEKH VEGQANKSSR 420 RDARYLPSHD SSLNGGRLRG RIKLPVRSSS PDDRADLRLD RARDRGRLSS ERPQPYSYQG 480 RSRDRIKGRM QEDINSDGRN NRVPHVRRDI INVNNSDFLR PKSLAELKGR KTAESNEQQP 540 PRKRKFQKLD GGEDLSFEGP MPLKEILKRK RGGEGNMSSG GSEDDQHERK HQTERTSMTS 600 RSVDFPSSVT KNGSDLPIQK EDSKLVPKSA DHQSPLYRTE NELEAEEEMV VEGAGTQDHK 660 GYDQRDGHDD DYEPVEGEDY NFDEGDPDDE FLDDDDDDFA KKLGVH* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228895.1 | 0.0 | zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A3Q7E8X4 | 0.0 | A0A3Q7E8X4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g008170.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |