PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim00g255510.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 452aa    MW: 50690.3 Da    PI: 4.8104
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim00g255510.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.92.7e-12711511128
                 NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknr..atksgyWkatgkdkevlskkg 97 
                         de+l+   L k v+g+++++    + vd+y   +P+++   + ++ +e++ F++ +kk++ +gk+ nr  +   g Wk   ++++v++kk+
  Sopim00g255510.0.1   7 DEQLM-ISLVKFVSGNSVQF----QFVDLYGNnKPSQIF-DT-TTATEYHVFTQLKKKKTgNGKNFNRgiVGGGGSWKGIDNSRPVYDKKK 90 
                         55555.44666677776555....667888653899996.33.345788888876666554899****74445899*************** PP

                 NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                         +++g kkt+ f   ++    +  W+m+eyrl
  Sopim00g255510.0.1  91 TVIGFKKTFRFE--EK----NHVWIMKEYRL 115
                         ***********7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.0181131IPR003441NAC domain
SuperFamilySSF1019413.66E-1228119IPR003441NAC domain
PfamPF023652.7E-636115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MGMNFDDEQL MISLVKFVSG NSVQFQFVDL YGNNKPSQIF DTTTATEYHV FTQLKKKKTG  60
NGKNFNRGIV GGGGSWKGID NSRPVYDKKK TVIGFKKTFR FEEKNHVWIM KEYRLCDKIL  120
KALRLRGLKR NLLYVALRGA SILRRFRITN ILNGNIAPVS LVFKESKLCA AIEEECSVHQ  180
QTPSVECSDN DIANYHKQLD AYAASVLEST VPYIPQQQED EIDSAHTNNI IPCGLVSLVL  240
KESNVAAAKE EEGSVFPDYD IATYHKQLEE EFVVCRITRK VNSGNFLGNC SSQCQETEIR  300
CDHELNSLLA KESNATQLPP AAMQEECSVP VVHQETPYVK EVECSVRPDL EQFSTSNVIP  360
CGPVSLVFKE SKLCAAIEEE CSVPQQTPSV SESDYDIATY HIELDAYAAS VLETMVPFIP  420
EEPPQEEVDS IPLFSEDFYI GHTNLWSYSN L*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0AC246743.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064738.12e-76uncharacterized protein LOC107009957
TrEMBLA0A494GA900.0A0A494GA90_SOLLC; Uncharacterized protein
STRINGSolyc00g255510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041