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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim00g012700.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
FAR1 |
Protein Properties |
Length: 241aa MW: 27094.2 Da PI: 10.3016 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim00g012700.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 28.4 | 5.5e-09 | 92 | 169 | 7 | 90 |
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
A+++GF++++++s+ + ++vC ++g+++ kk+ ++ ++ + ++gC ++ ++k +++w ++ l+ HnH++
Sopim00g012700.0.1 92 ANKAGFTIVTQRSSLI-----NPMFRLVCERSGTHKVPKKN--PKHARTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHPME 169
8999999999876665.....34889***********9999..888889999********8766666***************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MATTAIMVEN AEDVPGETKQ NFVENSGDVK PPKVEAKPNI DGAFVNVEAS KYVAGSGVLP 60 LQAHEVDTAR FFSDDVKSKD RDELLEWVRR QANKAGFTIV TQRSSLINPM FRLVCERSGT 120 HKVPKKNPKH ARTGSRKCGC LFMISGYQSK QTKEWGLNIL NGVHNHPMEP ALEGHIHSGR 180 LKEDDKKIVR DLIKSKMLSR NILIHLKNQR PHCMTNVKQV YMNVNKYGRQ IGVTRSRCNF 240 *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC149801 | 0.0 | AC149801.3 Medicago truncatula chromosome 2 clone mth2-32i15, complete sequence. |