PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim00g011660.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 311aa MW: 35535.2 Da PI: 4.3881 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.7 | 1.5e-11 | 38 | 96 | 36 | 98 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + le ++g+ Wev++ ++++g+++l+kGW++F++ + + +++F+++ r +f v +++ Sopim00g011660.0.1 38 VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSISIKSVLMFTYNPRCQF--SVAIYD 96 77999**********..********************************988888..777776 PP | |||||||
2 | B3 | 45.5 | 1.4e-14 | 220 | 292 | 10 | 87 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++++ + +p +fa++ ++++ + ++l +e+g +W+v++ + ++++++++GW F k+n++ g+++ Fkl++ Sopim00g011660.0.1 220 SHATC-MAIPLRFAQQTDIINMK--NMRLVNEEGVEWKVEI--EYARSMVIIKEGWTAFRKDNKIANGETCRFKLIRG 292 34445.99******999888554..7***************..888899*************************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.22E-13 | 13 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-8 | 18 | 96 | No hit | No description |
SMART | SM01019 | 0.056 | 20 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-8 | 38 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-12 | 38 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.306 | 38 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-16 | 208 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-16 | 208 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.561 | 210 | 304 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.69E-11 | 211 | 293 | No hit | No description |
SMART | SM01019 | 4.5E-7 | 213 | 306 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-12 | 222 | 291 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MANEFHGSSL RSSSPNNPKF IQIITSLDEL RRLMLNPVFL EAPHGKAWEV EVENSQGQIW 60 LAKGWSDFCD YYSISIKSVL MFTYNPRCQF SVAIYDQSKT EIEYPIDQDI ESDEQEEDIL 120 FAQANANIIE EDILILQSNA NVIEEDIPIL QSNTNEIEDE EEHIPVNCPQ TNANLIEQHK 180 EVREANSISE KVGPNNYSSR YSLVDLTGDN PFFEMVIKKS HATCMAIPLR FAQQTDIINM 240 KNMRLVNEEG VEWKVEIEYA RSMVIIKEGW TAFRKDNKIA NGETCRFKLI RGPIANVLQV 300 QKIPTPLCLQ * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238476 | 0.0 | AC238476.1 Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234716.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A494GAC9 | 0.0 | A0A494GAC9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g011660.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7499 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-11 | B3 family protein |