PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim00g011550.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 22224.8 Da PI: 4.1778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1e-16 | 20 | 110 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+++lt+ d +++rl++p fa++h ++ ++ + le ++g+ Wev++ ++++g+++l+kGW++F++ ++++ +++F+++ r +f Sopim00g011550.0.1 20 FIQILTSLD--ELRRLRIPVVFAKRHCENMLNP--VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSIRVKSVLMFTYNPRCQF- 103 566674444..55679**********4444444..***************..********************************988888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 v ++++ Sopim00g011550.0.1 104 -SVAIYDQ 110 .7777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 12 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-19 | 13 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.53E-16 | 18 | 109 | No hit | No description |
PROSITE profile | PS50863 | 11.801 | 18 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-9 | 20 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-13 | 22 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MANEFHGSSL RSSSPNNPKF IQILTSLDEL RRLRIPVVFA KRHCENMLNP VFLEAPHGKA 60 WEVEVENSQG QIWLAKGWSD FCDYYSIRVK SVLMFTYNPR CQFSVAIYDQ SKTEIEYPID 120 QDIESDEQEE DILFSQANAN IIEEDILILQ SNANVIEEDI PILQSNANVI EDEEEHIPVN 180 CPQTNANVIE QHK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238476 | 0.0 | AC238476.1 Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884623.1 | 1e-141 | B3 domain-containing protein At1g49475-like | ||||
Refseq | XP_025886111.1 | 1e-141 | B3 domain-containing protein At1g49475-like | ||||
TrEMBL | A0A494GAC9 | 1e-132 | A0A494GAC9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g011550.1.1 | 1e-140 | (Solanum lycopersicum) | ||||
STRING | Solyc03g042510.1.1 | 1e-140 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7499 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-16 | B3 family protein |