PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g033300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 478aa MW: 53535.4 Da PI: 5.4919 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.6 | 2.6e-35 | 19 | 109 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll Sopen12g033300.1 19 FLSKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFLKDQKHLL 102 9****************************************************************999.........**************** PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k Sopen12g033300.1 103 KNIHRRK 109 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.27E-36 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.0E-61 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.7E-38 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-31 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-20 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDVISAAVAA GGGGGPAPFL SKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH LLKNIHRRKP IHSHSHPPGS 120 TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLI 180 FVEKAIQNPD FVERLAQKLE SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN 240 LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNEDGGSPAH RRISEGWSRE VQLRTVGAIY 300 TPEAIELSDT GTSFMLKMDS SLPRASSNVE SSRLHSLPQS LTSNEEVDGH ISCQLNLSLA 360 SCLSQVDKNQ YSARMPQIGQ EIGKRFESQF DANDKIPPTD DKSLPPSHDA TTNKQVPAAA 420 PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNIYDEQDER KSNQGVASNT RKVEHLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 1 | 108 | 12 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 1 | 108 | 12 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 1 | 108 | 12 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059195.1 | 0.0 | heat stress transcription factor A-5 isoform X1 | ||||
Swissprot | Q94BZ5 | 1e-162 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A3Q7JEE1 | 0.0 | A0A3Q7JEE1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g098520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9461 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-164 | HSF family protein |
Publications ? help Back to Top | |||
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