PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g030000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 574aa MW: 60554.9 Da PI: 7.4495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.3e-08 | 203 | 247 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I + Rt+ q+ rw Sopen12g030000.1 203 RKPWSEAEDVELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 247 789************************984222488888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.92 | 198 | 255 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.24E-12 | 199 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-13 | 199 | 250 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 202 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-6 | 203 | 247 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.05E-13 | 204 | 252 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MFEKMKKQKC FISEEDIAIL LQRYSVSTVL AILREVGQVA DEKIDWNVMV RKSTTGITNA 60 REYQMLWRHL AYRHGLVDKF DDEAQPLDDD SDLEFELEAF PAVSSEASAE AAASAKMLIA 120 SGAPNDANML NGSTIEAPLT INIPNGQTSR TGMDNSFQGT SMHGTNITVP VAVQKQPLSI 180 VVAAEGLDTH GPGCTNLPPR RKRKPWSEAE DVELIAAVQK CGEGNWANIL KGDFKGDRTA 240 SQLSQRWAII RKRQGTMVGN GSQLSEAQLA ARHAMSHALN MPIGAGVGPN SGGGSSNSSL 300 PVTADLASGG AQSQHQQDPL SSKPRIVPQK PAPKPTTSSD SMVKVTAVAA GARIATSSNS 360 ASQVKLAQPK TPLQIPGGGS AVKSSVLGST NGLPSNVHFI RTGLVSHSAG PPKAVHSAGP 420 SNASRPGTQQ GLSHSLKPAS PTVQPKPIGI SSKPNALAEP TAPTSTPVAE LKVNTNQEVL 480 QKVQQDQTPP SVNPLIKKAS ELKEHKKEDQ DPVHANAPGV QVQEKLISLQ GQEIANNDTS 540 DPNEVPTRTE SGSANGGDPS KEPAETENGK NKME |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 204 | PRRKRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014200 | 0.0 | BT014200.1 Lycopersicon esculentum clone 133377F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060135.1 | 0.0 | uncharacterized protein LOC107006013 | ||||
Refseq | XP_027769480.1 | 0.0 | uncharacterized protein LOC107006013 | ||||
TrEMBL | A0A3Q7JBJ6 | 0.0 | A0A3Q7JBJ6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g087970.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3434 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-68 | MYB_related family protein |