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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopen12g029850.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 198aa MW: 22570.1 Da PI: 8.655 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen12g029850.2 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 83 | 1.9e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri++k rqv f+kRr+g+lKKA+E+SvLCd++vav+i+s++g+l+e+ss
Sopen12g029850.2 9 KRIQDKNCRQVAFCKRRKGLLKKAKEISVLCDVDVAVVIISNRGRLHEFSS 59
79***********************************************96 PP
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2 | K-box | 43.8 | 1.1e-15 | 81 | 167 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ae e++ e Lq++ R+l + + L++ +L +Le++L+++l + R++K++l+le+ + l +kek lqee+k L+ +++
Sopen12g029850.2 81 NAEIQVAEVSGFTTMGELLQTTERQLEETNADGLTVTDLIHLENELQTALIHLRARKTHLMLESAKVLHEKEKLLQEEKKHLEDNIA 167
555556677777888899****************************************************************98875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0010048 | Biological Process | vernalization response |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISVLCD VDVAVVIISN RGRLHEFSSN 60 NSLTGMLQRY ESHVGAEKEI NAEIQVAEVS GFTTMGELLQ TTERQLEETN ADGLTVTDLI 120 HLENELQTAL IHLRARKTHL MLESAKVLHE KEKLLQEEKK HLEDNIASIK KNTKVNEMSD 180 LPAPHMICGQ QKVTLNFF
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
5f28_A | 9e-16 | 1 | 84 | 1 | 84 | MEF2C |
5f28_B | 9e-16 | 1 | 84 | 1 | 84 | MEF2C |
5f28_C | 9e-16 | 1 | 84 | 1 | 84 | MEF2C |
5f28_D | 9e-16 | 1 | 84 | 1 | 84 | MEF2C |
6c9l_A | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975451 | 2e-98 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |