PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g029470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 590aa    MW: 66701.6 Da    PI: 4.6917
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g029470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-50231492128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       ppGfrFhPtdeelv +yLkkk+ +k++ l ++i+e+d+yk+eP+dLp  +k+k+++++w+fFs+rd+ky++g r+nr tk+g Wk tgkd+ +
  Sopen12g029470.1  23 PPGFRFHPTDEELVLYYLKKKICRKRILL-DAIAETDVYKWEPEDLPdlSKLKTGDRQWFFFSPRDRKYPNGARANRGTKRGHWKVTGKDRII 114
                       9*************************999.99**************96559999*************************************** PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++++vglkktLvfykgrap ge+tdWvmhey++
  Sopen12g029470.1 115 MC-NSRAVGLKKTLVFYKGRAPVGERTDWVMHEYTM 149
                       **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5817172IPR003441NAC domain
PROSITE profilePS5100554.68722172IPR003441NAC domain
PfamPF023651.2E-2523148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MKMFELSDSD SFAVFASSKN VFPPGFRFHP TDEELVLYYL KKKICRKRIL LDAIAETDVY  60
KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT KRGHWKVTGK DRIIMCNSRA  120
VGLKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG  180
EQYGAPFREE EWADDECPSA KGFVHQDNST NHVIEAPSVD GRLEELLNPV LMEPLSVDYD  240
YAVEQLVQEE DTRSTLLYHS AKEVNFPHRS AVIAPAKESF DLTQSGTSQR QLHEALEVTS  300
APVIYEQQPH VVEEDFLEMD DLLGPEPSTQ NFDNLGPCVQ NFDEAGPSGQ NFDMPAGNFE  360
DLPFDYFDGL AEFDLYHDAP LLDDVRTTEV GQNTEPYMNN LVNGSVNPAS TTYINTFQHE  420
MMNNQPMYLN NSEQISNQLW VHDQRFNISY PSEANQLVAP PATSGVVYDS ILANHPMDAN  480
QNQLPNQDEG TPSWLASQLW AFVDSIPTAP AIAAESPVVN SAFKRMSSFS KMRINARNMN  540
VVAAGNTATS RSSRYSKNGL FYFSFVGILC AILCVLLGTF VDILRRPISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-442217817171NO APICAL MERISTEM PROTEIN
1ut4_B1e-442217817171NO APICAL MERISTEM PROTEIN
1ut7_A1e-442217817171NO APICAL MERISTEM PROTEIN
1ut7_B1e-442217817171NO APICAL MERISTEM PROTEIN
3swm_A2e-442217820174NAC domain-containing protein 19
3swm_B2e-442217820174NAC domain-containing protein 19
3swm_C2e-442217820174NAC domain-containing protein 19
3swm_D2e-442217820174NAC domain-containing protein 19
3swp_A2e-442217820174NAC domain-containing protein 19
3swp_B2e-442217820174NAC domain-containing protein 19
3swp_C2e-442217820174NAC domain-containing protein 19
3swp_D2e-442217820174NAC domain-containing protein 19
3ulx_A1e-442214915140Stress-induced transcription factor NAC1
4dul_A1e-442217817171NAC domain-containing protein 19
4dul_B1e-442217817171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135490.0BT013549.1 Lycopersicon esculentum clone 132273F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060131.10.0NAC domain-containing protein 17-like
TrEMBLA0A3Q7JB860.0A0A3Q7JB86_SOLLC; Uncharacterized protein
STRINGSolyc12g056790.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-122NAC domain containing protein 17