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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen12g029430.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 140aa MW: 16707.8 Da PI: 9.9885 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen12g029430.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 83.1 | 2.7e-26 | 57 | 116 | 1 | 59 |
---SS-EEEEEEE--TT-.SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgs.efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYG+K+vk++ ++ r+YY+C+ +gC+ kk+ver+ +d +++++tYeg+Hnhe
Sopen12g029430.1 57 LDDGYKWRKYGKKKVKSNqKYLRNYYKCSIRGCMIKKRVERDGHDSSYLITTYEGKHNHE 116
59**************873689*************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 140 aa
Download sequence Send
to blast |
MTQDYSYNGS SSNSYYATPP NMNHLKEKSK EGIIKKEIKN NERHVIALRT KTQLEILDDG 60 YKWRKYGKKK VKSNQKYLRN YYKCSIRGCM IKKRVERDGH DSSYLITTYE GKHNHEIYSS 120 IIYNHTEVNS EFELNFHRGR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975451 | 1e-101 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |