PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g024030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 386aa    MW: 42629.2 Da    PI: 4.8435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g024030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18119168255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G+r ++ +g+W+AeIrdp     +  r+++g+f taeeAa+a++a +++++g
  Sopen12g024030.1 119 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWIGTFNTAEEAARAYDAEARRIRG 168
                       69*******.**********94....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.23E-31119177No hitNo description
SMARTSM003804.0E-33119182IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21119178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-31119178IPR001471AP2/ERF domain
PROSITE profilePS5103223.736119176IPR001471AP2/ERF domain
PRINTSPR003673.5E-11120131IPR001471AP2/ERF domain
PfamPF008471.7E-11120168IPR001471AP2/ERF domain
PRINTSPR003673.5E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCGGAIISDW IPPSRSSSRL TADQLWGCAD LQNKKRNKKK RNPSNYHSKR LRSENVDFEA  60
DFQDFKDFSD DEEAYSFDIK PFVFSASELS GTSAGSKSLL SVDANKEVEK SAKRQRKNQY  120
RGIRKRPWGK WAAEIRDPQK GVRVWIGTFN TAEEAARAYD AEARRIRGNK AKVNFPDEAS  180
VPASRQAGKV NPRKVLSDES SNPVPPNTML MNNLNSGYCD NVGLLEEKTK TLNGYEALCV  240
TPVDTGPNPY AHPAAAGVYF NSDQGSNSFG PSDFWGETCS RTPDISSVLS AAIECDEAQF  300
IEGVDLEEKP KSCTNNLGPN NVNTAQKPPE VFSTFESQLK FYQTPYSEGN MDVPVDAFLD  360
SDATQGVENA MDLWSFDELS SLMGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21119176260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112126KRQRKNQYRGIRKRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134350.0BT013435.1 Lycopersicon esculentum clone 132076R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059474.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A3Q7JAJ20.0A0A3Q7JAJ2_SOLLC; Uncharacterized protein
STRINGSolyc12g049560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-60related to AP2 12