PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g022680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92430.9 Da    PI: 6.5942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g022680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191674357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Sopen12g022680.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74
                      5679*****************************************************97 PP
2START175.63e-551603672204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + ++  g+++
  Sopen12g022680.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIE 251
                       789*******************************************************.8888888888****************9999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a+++l+p Rdf+ +Ry+    +g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s v++v+h++l++++++++l
  Sopen12g022680.1 252 LLYMQLYAPTTLAPpRDFWLLRYTTVTDDGSFVVCERSLGNTQNGPSmpqVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMNLEAWSVPEVL 344
                       **********************************************9998899**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+++ ++kt++a+l++++
  Sopen12g022680.1 345 RPLYESSAVLAQKTTMAALRQLR 367
                       *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7421175IPR001356Homeobox domain
SuperFamilySSF466893.51E-171377IPR009057Homeodomain-like
SMARTSM003892.3E-161379IPR001356Homeobox domain
CDDcd000868.77E-171676No hitNo description
PfamPF000461.1E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-181874IPR009057Homeodomain-like
CDDcd146861.10E-568107No hitNo description
PROSITE profilePS5084826.882150365IPR002913START domain
CDDcd088751.09E-76154369No hitNo description
SuperFamilySSF559614.4E-37159367No hitNo description
SMARTSM002348.5E-41159369IPR002913START domain
Gene3DG3DSA:3.30.530.208.6E-25159365IPR023393START-like domain
PfamPF018521.3E-52160367IPR002913START domain
PfamPF086702.5E-50694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYTTVTDD GSFVVCERSL GNTQNGPSMP  300
QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM  360
AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN EALNGFSSEG WSMLDNDGMD  420
DVTILVNSSP DKLMGLNLSF SDGFTSLSNA VLCAKASMLL QSVTPAILLR FLREHRSEWV  480
DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVFHSPEDV  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDTP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSKLA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSNFGSL GGLRLPLGTP EAHTLSQWIC QSYRRFLGVE LPKLRSEGSE  720
SLLDSLWHHS DAIICCSAKA LPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE KAVAWKVLNE EDTAHCIGFM FVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061298.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A3Q7JAS20.0A0A3Q7JAS2_SOLLC; Uncharacterized protein
STRINGSolyc12g044410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]