PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g017030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 326aa    MW: 37053.4 Da    PI: 6.6809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g017030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.3e-5551321128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yL++k+++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke++
  Sopen12g017030.1   5 LPPGFRFHPTDEELITCYLNNKISDFNFTA-RAIADVDLNKSEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATDAGYWKTTGKDKEIY 96 
                       79*************************999.89***************999999*************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  +g lvg+kktLvfy+grapkgekt+Wvmheyr+
  Sopen12g017030.1  97 RGgTGVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRI 132
                       *867778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-633153IPR003441NAC domain
PROSITE profilePS5100559.8195153IPR003441NAC domain
PfamPF023653.0E-286132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDENLPPGFR FHPTDEELIT CYLNNKISDF NFTARAIADV DLNKSEPWDL PAKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TDAGYWKTTG KDKEIYRGGT GVLVGMKKTL VFYRGRAPKG  120
EKTNWVMHEY RIETTFGYKP SKEEWVVCRV FQKSSTVKKP QPTSSSPLSL ESPCDANYTI  180
TNELGDIELP FNFNYLTTTP STAINSISLH NYNNDNINLA AATREANTHP LLPWSSNLLS  240
SNLSSVNSLL FRALQLKSYS PREQATTTHD YAFMLPQENI ITTQFGNDFA VNNIGAPSSF  300
TVLDNSVQQQ QQQQQEQSYK LDSNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-55415916171NO APICAL MERISTEM PROTEIN
1ut4_B2e-55415916171NO APICAL MERISTEM PROTEIN
1ut7_A2e-55415916171NO APICAL MERISTEM PROTEIN
1ut7_B2e-55415916171NO APICAL MERISTEM PROTEIN
3swm_A3e-55415919174NAC domain-containing protein 19
3swm_B3e-55415919174NAC domain-containing protein 19
3swm_C3e-55415919174NAC domain-containing protein 19
3swm_D3e-55415919174NAC domain-containing protein 19
3swp_A3e-55415919174NAC domain-containing protein 19
3swp_B3e-55415919174NAC domain-containing protein 19
3swp_C3e-55415919174NAC domain-containing protein 19
3swp_D3e-55415919174NAC domain-containing protein 19
4dul_A2e-55415916171NAC domain-containing protein 19
4dul_B2e-55415916171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5982210.0KT598221.1 Solanum tuberosum cultivar Desiree NAC103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060811.10.0NAC domain-containing protein 100
TrEMBLA0A3Q7J8P30.0A0A3Q7J8P3_SOLLC; Uncharacterized protein
STRINGSolyc12g036480.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-97NAC domain containing protein 58