PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g016990.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 267aa MW: 29798.5 Da PI: 8.4107

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g016990.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.7	4.1e-08	186	233	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Sopen12g016990.1 186 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 233 8***********************8....3569999*********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.67E-11	180	237	No hit	No description
SuperFamily	SSF47459	6.94E-16	180	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.173	182	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-15	185	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-5	186	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-8	188	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MPYHCIPTAP PEVAEYGTFQ PPPQPVXPQP VIGFPLPVPP PGSVLEPSEY YARGYHSVPA 60 PPEVAEYGTF QPPPQPVIGF PLPVPPPGSV LEPSEYYARG YHSVPENFQQ DMFNLPVPTR 120 NDINESKKRK TIETPESSSA YSSPAISSRR KTGKGRGKRV KRDENEEEKL RQVVHVRAKR 180 GQATGSHSLA ERVRRGKINE RLRCLQDIVP GCYKSMGMAV MLDEIINYVQ SLQNQVEFLS 240 MKLSAASTYY DFNSERHFGD NAESKGI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	3e-92	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060886.1	1e-105	LOW QUALITY PROTEIN: transcription factor BEE 1-like
Swissprot	Q8GWK7	5e-51	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A3Q7J7Y0	1e-102	A0A3Q7J7Y0_SOLLC; Uncharacterized protein
STRING	Solyc12g036470.1.1	1e-103	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	1e-51	BR enhanced expression 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]