PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g004380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 418aa    MW: 44519.6 Da    PI: 8.1118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g004380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-072151125
                      GTS--TTTTT-SS-S CS
           zf-CCCH 11 rtGtCkyGdrCkFaH 25
                      r G C+yG+rCkF H
  Sopen12g004380.1  2 R-GSCQYGERCKFLH 15
                      4.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.253118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4218IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4215IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MRGSCQYGER CKFLHAAQQQ PKPNPFGFGI QSTNFQSTNM QQTKSNPFGF GVQSNSQPRG  60
SSDFGLKQNQ YKPFENKWTR SATTNSSSSR QTDNQPVAPN HTCTDAESCR RQIVEDFNNE  120
KPLWLLTCYG HRKNGPCDIT GDVSYEELRA VAYDDAKRGQ SLMSIVERER SLVNSKVAEF  180
ENLLRNPYAS TSTSALNAQS PFPGATPSAS LSAQSPFPGA APSASSPFPG AAPNASLSAQ  240
SPFPGAAPNA LSSAQSSFPP SASSFSQLGT ILNTGTSTPP TSTFGQPSMP GNSFKTSNSS  300
GANAFSFGNT STSGSFGFGT QVPTQSYQNP STPSNIFASS GRNLFSTSTT SPHFANPSGG  360
QLPTTSQGLF PVTTSPVSIN LTNTASTEDF SGDNSIWTKK EWKIGEIPEE APPDRYIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061935.10.0zinc finger CCCH domain-containing protein 16
TrEMBLA0A3Q7J3J80.0A0A3Q7J3J8_SOLLC; Uncharacterized protein
STRINGSolyc12g009390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.15e-61C3H family protein