![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen12g003600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 375aa MW: 42200.9 Da PI: 5.9491 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.8e-08 | 131 | 151 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C +aHg Sopen12g003600.1 131 ACPEFRK-GNCNRGDSCEYAHG 151 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 5.4E-6 | 126 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 127 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-6 | 131 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 131 | 153 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-4 | 158 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.625 | 161 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.49 | 161 | 184 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MIGERSRRIP TVDVPPWSYS DDQTANMQFM LSPSSNSIST PNNFNFSNFI VEDDYPLFCN 60 DAEDIDEFEL ENREIELPVD VYACDNFRMY EFKVRRCGRG RSHDWTECPY VHPGEKARRR 120 DPRKFHYSGT ACPEFRKGNC NRGDSCEYAH GVFECWLHPG RYRTQPCKDG GNCKRRVCFF 180 AHSPEQLRVL GPGSGSGQGT GSDSPRRYVK GLHFVSSPES SSPPSESPPM SPMTANSFTS 240 LSRSVGSNSV SEVMASLRQL QLNRLNSMPS SSWNVQMGSP VFGSPRRPVI RPGFCSLPAT 300 PSGDPTRPGN RCFDLWENEE EPVMERVESG RDLRVKMFER LSKENPLDDP ENPNPNINSG 360 SGTNPDVGWV SDLIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059622.1 | 0.0 | zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-114 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A3Q7J3G8 | 0.0 | A0A3Q7J3G8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g008660.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G19810.1 | 9e-96 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|