PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 356aa    MW: 39275.9 Da    PI: 6.0738
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.85.1e-311869103
                       HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                       +++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++i rkk
  Sopen12g003060.1   1 MVNDPKIDGLIAWGTANNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLKNIVRKK 84 
                       89********************************************************999.........**********************9 PP

                       XX CS
      HSF_DNA-bind 102 se 103
                       ++
  Sopen12g003060.1  85 HS 86 
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-38183IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-25183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-31183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-28183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.9E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVNDPKIDGL IAWGTANNSF IVVEPLDFSQ RILPVYFKHN NFSSFVRQLN TYGFRKVDPD  60
KWEFANEWFL RGQTHLLKNI VRKKHSRNSC SQKQDESEDE EILTEISRLK QEQKALEHEV  120
ENMTRRLEAT EKRPQQMMAF LCKVVDDPEI LPRILMEKER SKRLSLTNRE KKRRLVISNS  180
TSCSSVKSED AVGATSSFHS PDANFDKDAI CQSSPSSGTP PPPPTGLGSR PMITYEPGTI  240
QSIRSPDANF DKDTFYQSSP SSETPSTAWM NQQKVIIGGR PMMMINEAYG SCPTMSSTLS  300
TGSSESGGFT APPMDNFYGY DYGGGGGGGG GGGGGTPATE EASTPPYPFS LFGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-2218317110Heat shock factor protein 1
5hdn_A4e-2218317110Heat shock factor protein 1
5hdn_B4e-2218317110Heat shock factor protein 1
5hdn_C4e-2218317110Heat shock factor protein 1
5hdn_D4e-2218317110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059451.10.0heat stress transcription factor C-1 isoform X1
SwissprotQ9LV521e-82HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A3Q7J2P40.0A0A3Q7J2P4_SOLLC; Uncharacterized protein
STRINGSolyc12g007070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-84heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]