PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g002190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 408aa    MW: 45122.2 Da    PI: 4.9904
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g002190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-06444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      +C+ ++e++ + +C+++  +lC +C  + H+       H++
  Sopen12g002190.1  4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                      7*****************************65777777776 PP
2zf-B_box26.31.6e-084689440
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                       +C++++++++   C + +  lC++C  ++H +       H+++
  Sopen12g002190.1 46 LICERCNSQPAVVRCVEERISLCQNCDWSGHASsssgssmHKRQ 89
                      68*****************************7778888888875 PP
3CCT583.3e-20352394143
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                       R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrF k+
  Sopen12g002190.1 352 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFIKA 394
                       899*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.55E-7447No hitNo description
SMARTSM003364.4E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7744391IPR000315B-box-type zinc finger
CDDcd000217.63E-44773No hitNo description
SMARTSM003362.34891IPR000315B-box-type zinc finger
PROSITE profilePS5101714.922352394IPR010402CCT domain
PfamPF062035.5E-15352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC  60
VEERISLCQN CDWSGHASSS SGSSMHKRQA LNSYTGCPSA AELSNIWSFL LDDPSIGDTC  120
EQRMGSMSIN DNRPRDGQDP QGKDNSQNVC AAVEANDMSI SEKSNLLVES SMPTFDNKLH  180
NMEPPIESSS KGCYMGAKGS SLFEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE  240
NENLDSFFGM KDIKGADYSY HGVNATEGLS NARVNTVQPT CSDAASADSI MSCKTDSILY  300
FARQSSLSVS NQTGGECSAG DHQDCGVSPM LLMGEPPWCP PCPEISSTST SRSNAVLRYK  360
EKKKTRKFDK RVRYVSRKAR ADVRRRVKGR FIKAGDAYDY DPLPTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061619.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_015061620.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-127COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3Q7J2Z40.0A0A3Q7J2Z4_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000741430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-99CONSTANS-like 9