PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g030710.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 157aa    MW: 17748.4 Da    PI: 10.0896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g030710.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000563658123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k+F++   L  H  +H
  Sopen11g030710.1 36 FECKTCNKRFPSFQALGGHRTSH 58
                      89**********99998888777 PP
2zf-C2H213.60.00027597123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC++Cg+ F     L  H+r+H
  Sopen11g030710.1 75 HKCSICGMEFALGQALGGHMRRH 97
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0973663IPR007087Zinc finger, C2H2
SuperFamilySSF576677.75E-93697No hitNo description
PfamPF139123.0E-123660IPR007087Zinc finger, C2H2
SMARTSM003550.0873658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-473100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-974100IPR007087Zinc finger, C2H2
PROSITE profilePS501579.97275102IPR007087Zinc finger, C2H2
SMARTSM003550.0527597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MTTMKRSRED NGQVEAEAMA NCALMLSSRL NNNNDFECKT CNKRFPSFQA LGGHRTSHNK  60
KPQLLGETNQ KSKVHKCSIC GMEFALGQAL GGHMRRHRDE INKVTSHEKT IIPILHKSNS  120
SKRISIFGVN LNITPNVDDL KLWPMEEAPS PVLRIFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057986.11e-115zinc finger protein ZAT11-like
SwissprotQ9SLD44e-29ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3Q7J2571e-104A0A3Q7J257_SOLLC; Uncharacterized protein
STRINGSolyc11g073060.1.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-31C2H2 family protein