PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g029860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 476aa    MW: 53370.3 Da    PI: 6.4182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g029860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000595477123
                      EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                      + C  Cgk Fs+   L  H+++ H
  Sopen11g029860.1 54 HICCECGKEFSSGKALGGHMSSaH 77
                      68******************9988 PP
2zf-C2H213.10.00029125144221
                       EETTTTEEESSHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                       +C++C+k F++k +L  H+r
  Sopen11g029860.1 125 SCEICHKNFPSKKSLFGHMR 144
                       6******************8 PP
3zf-C2H216.32.7e-05341363123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ykC+ Cgk+F+++  L  H ++H
  Sopen11g029860.1 341 YKCNVCGKMFTTHQALGGHRSSH 363
                       9***************9999998 PP
4zf-C2H213.40.00023421443123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k F++   L  H+r+H
  Sopen11g029860.1 421 HKCKFCDKIFPTGQALGGHQRSH 443
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.03E-75276No hitNo description
PROSITE profilePS501579.645482IPR007087Zinc finger, C2H2
PfamPF139127.7E-85477IPR007087Zinc finger, C2H2
SMARTSM003550.385477IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805677IPR007087Zinc finger, C2H2
SuperFamilySSF576672.03E-7119146No hitNo description
PROSITE profilePS501579.66124151IPR007087Zinc finger, C2H2
SMARTSM003550.024124146IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-6126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4340365IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.14E-10341363No hitNo description
PfamPF139122.9E-7341364IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.593341368IPR007087Zinc finger, C2H2
SMARTSM003550.0076341363IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280343363IPR007087Zinc finger, C2H2
SuperFamilySSF576675.14E-10416443No hitNo description
PfamPF139129.1E-9420444IPR007087Zinc finger, C2H2
SMARTSM003550.018421443IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868421448IPR007087Zinc finger, C2H2
PROSITE patternPS000280423443IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEAEDDQENN GSCEKGLSSS NLKVKINLKL KKDKDESRGD EEKNMLLMKQ KKDHICCECG  60
KEFSSGKALG GHMSSAHVQA NQRLEESLKK KKSLIKRSRI DDDDDDDEEE VVLEEEEEMG  120
GVVVSCEICH KNFPSKKSLF GHMRCHPDRE WRGMKPPSKK ISKSKGFGEA RFEDVNEGFE  180
DRFASLRDEE EEDGGGGGGG VRFNVVELPP LKDWGAKDRR GRSPLKRSVS STIMDDDKEL  240
HDAVQQLINL VNGNVNNNNN NKNRSEVMMS SSNSVGSAPK EAAFRDLKDK SKKKGVVIDD  300
TKEKNREETK KRKREKELVK LEPGQDLVPS PVLKKSVEVK YKCNVCGKMF TTHQALGGHR  360
SSHNKLKISI ENTIDEIKGG NDEENNNNTQ DHGQLGNQEI NNHGNIIIND QYGSNNNNNV  420
HKCKFCDKIF PTGQALGGHQ RSHLTNNQEE SSSQNASKVL DFDLNELPHL DDDTSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291313KKKGVVIDDTKEKNREETKKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057761.20.0zinc finger protein ZAT9-like
TrEMBLA0A3Q7J1A40.0A0A3Q7J1A4_SOLLC; Uncharacterized protein
STRINGSolyc11g072210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-17zinc-finger protein 2