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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g028750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 335aa MW: 38441.2 Da PI: 7.0752 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.7 | 2.3e-09 | 90 | 114 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ GtC+ G+ C+FaHg Sopen11g028750.1 90 YKTRMCAKFLE-GTCRNGEHCTFAHG 114 9**********.*************9 PP | |||||||
2 | zf-CCCH | 25.7 | 1.9e-08 | 149 | 171 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yGd+C+F H Sopen11g028750.1 149 MKICKKFYNGEECPYGDKCNFLH 171 579******66************ PP | |||||||
3 | zf-CCCH | 38.3 | 2.2e-12 | 224 | 250 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ + tG+C++ drC+FaHg+ Sopen11g028750.1 224 WKTKICSKWETTGQCPFRDRCHFAHGQ 250 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-15 | 86 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-9 | 87 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-4 | 89 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-6 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-6 | 149 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-8 | 149 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-16 | 219 | 256 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-10 | 220 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.249 | 223 | 251 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-8 | 224 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MTFSDQPQQP VPSHFMQMPF VGGDAEDVWS HSSMNHELFE SYSQFEHAPP FKRMREFDSN 60 SLNSAAFSAI NSRVNPPNLP GSKGTSHIFY KTRMCAKFLE GTCRNGEHCT FAHGVEDLRE 120 PPPNWQDLVR EKDRGAENWN DDQKIIHRMK ICKKFYNGEE CPYGDKCNFL HERPPKFKTD 180 MPRHRESSAI SIGTTGNRCD TELIEISKHG NADSDAVRIK PVYWKTKICS KWETTGQCPF 240 RDRCHFAHGQ SELQMPTGRV EMDMLTNSGP ITPRPFSIQP VDSSSANTLV NASMQEEKEE 300 KKIHKWKLSK KISRIYGDWI DDLVPPHLHP DNADN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057884.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Refseq | XP_027768659.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q9LT81 | 7e-84 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A3Q7J167 | 0.0 | A0A3Q7J167_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g070070.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6553 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-78 | C3H family protein |