PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g028430.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 590aa    MW: 66853.4 Da    PI: 6.0025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g028430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-10462510348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        W+t E ++lv++v ++G g+W+ I r++     +R++ ++k++w+++l
  Sopen11g028430.1 462 YWSTTEVLKLVEGVSKYGVGRWSDIKRMFFqssVHRSPADLKDKWRNLL 510
                       6****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.265454514IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-12455515IPR009057Homeodomain-like
SuperFamilySSF466891.05E-15457531IPR009057Homeodomain-like
SMARTSM007173.0E-10459512IPR001005SANT/Myb domain
CDDcd116604.14E-17461511No hitNo description
PfamPF002496.2E-8462510IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MLGKFGQTSK VQTSMDSFTY NWKTPNECAK SSQQEPEQVV SAASIYFASE EEAIGVEQLF  60
AEPEYGDIVD TLLDFNTCAC SLPESYTKEF SASDSVVINS DRAFPLDAVQ RGLSEVDKTR  120
EKFLDGLSNG YNENHCSISC EDYLLDIELE EEIPTLDDVT RDVSCIENVN LENKLADSEQ  180
RNCDVHVLKL SDASTSFDHD ALDEFEDMST DKLLEVFRNM FGHQTSVADK QWLESHMIFG  240
LENQEMSDKN YCIPKSSLDS SENQGVKVLP ACQNLLKVST AFASIFNFRT KPRANHVKRR  300
EHIQWNSFKC LYSAAGEIQL DFPDKWDSKE LAKENLKCDG TKLGISEQHL KCKPSRGGFG  360
RRYYHRGAKV SSQGLGKRNF QVGCIQIPPG LPIEERLIKR EGHLSKDCRA NRAYNSNIHS  420
VEAQDDPSGT LSDQSTDSSS EDDWTIGSET RGTNQDRKHN KYWSTTEVLK LVEGVSKYGV  480
GRWSDIKRMF FQSSVHRSPA DLKDKWRNLL RASCQRLQSR RGVDAKKKHG KSRIPHEVLN  540
RVRELAVIYP YSRRHRTRIS PTASLASSSN VESDSQLSMN EEQNTLNLTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057889.20.0uncharacterized protein LOC107004165
TrEMBLA0A3Q7J0J20.0A0A3Q7J0J2_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000207900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-24TRF-like 6