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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g028060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 921aa MW: 100798 Da PI: 4.9642 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1.1e-08 | 109 | 136 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt lC++f+r+ C++G++C++aHg+ Sopen11g028060.1 109 WKTTLCSYFRRNDgSCSHGESCRYAHGE 136 8**********756************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-13 | 102 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.44E-7 | 106 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 108 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00360 | 0.0074 | 198 | 265 | IPR000504 | RNA recognition motif domain |
CDD | cd00590 | 1.57E-8 | 199 | 264 | No hit | No description |
SuperFamily | SSF54928 | 1.49E-8 | 202 | 282 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 4.5E-7 | 202 | 264 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 44.202 | 328 | 921 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 3.32E-48 | 331 | 356 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 3.32E-48 | 388 | 491 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 3.32E-48 | 563 | 683 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 2.4E-64 | 580 | 683 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 5.1E-10 | 627 | 685 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 3.58E-7 | 629 | 683 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 2.4E-64 | 800 | 859 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 4.2E-8 | 807 | 855 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 3.32E-48 | 807 | 860 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
PROSITE pattern | PS01230 | 0 | 815 | 847 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 2.4E-64 | 896 | 921 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 3.32E-48 | 905 | 920 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 921 aa Download sequence Send to blast |
MSTETVNPEL NVEESSEKLH SPVIVKSELN GDDSSEHLQL PETLKTELNG EDSSEQLHSS 60 VIVKSELNGD ETSEQLKLTE TLAEPTEKRK REGSETVTET EQKQQNPLWK TTLCSYFRRN 120 DGSCSHGESC RYAHGESELR VRPDNTWDPT SDRAKKMAKT AADDDGEKAE DKEEKRNDVM 180 MTEALDDDEC SSVSGLSKCL VNLPMKWSSD NLRCFLKEHG VTFKSAKKKK GMAVGFATFE 240 NAEQVKTAVK ELDGKPAGNK ILKVGDIIPR AFERKGNSAM SSFHNNQQGE KQTETGDGLD 300 LTKKSEESEA EDPVTSDSVL KGRCVRDVVT PLAKMPYADQ LEQKKSSLTR TLKTLTRNAR 360 KACPNGVPLP EWILKAREIG GLPCELEGII ESPLITGYRN KCEFSAGFSV LGKPTVGFQL 420 GNFREGVTAV EEPVDCPNVS RIACKYAAIF QEFLQQSTLP IWNRLNNTGF WRQLTVREGR 480 MPGKIVEVEN PSANISEVML IVQVSTLSFD DALVNDELQG LAKAFAMGAS IASPTLPLTA 540 LVVQDHTGIS NVAPADAPLR VLPFPREESY SELHADNAVA EAKIHDYING LKFCISPTAF 600 FQVNTLAAEK LYSLAGDWAS LGPDTLLFDV CCGTGTIGLT LANRVGMVVG IEMNASAVSD 660 AQRNAEINGI KNCRFICGKA EDVMGSVLKE YLASPAKVDG LLDIEEKKNQ ENTTSTEKTD 720 SIVNASKTDG ESGIGSENGK SMCIDQDSTP TENMYSTDSA AEPEEKTGLE CTNGKSLSES 780 SADGTTEPAT QLKKCSSDNL TTPVQHFKNV VAIVDPPRAG LHPTVIKLLR TNSRLRRLVY 840 ISCNPESLVA NAIELCTPSP DESEKGDNRN NRLWRKMSSA TLARHRTKSM PNSEPFKPVK 900 AMAVDLFPHS PHCELVMLLE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 1e-18 | 584 | 690 | 265 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058657.1 | 0.0 | zinc finger CCCH domain-containing protein 24 isoform X2 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A3Q7J096 | 0.0 | A0A3Q7J096_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g069340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8074 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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