PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g027970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 498aa    MW: 55388.8 Da    PI: 9.8187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g027970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057597123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Sopen11g027970.1 75 FVCEICNKGFQRDQNLQLHRRGH 97
                      89*******************88 PP
2zf-C2H211.90.0007152174123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H + +
  Sopen11g027970.1 152 WKCEKCSKKYAVQSDWKAHSKIC 174
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.95E-77497No hitNo description
SMARTSM003550.0177597IPR015880Zinc finger, C2H2-like
PfamPF121717.9E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM0035588117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-5139173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.95E-7147172No hitNo description
SMARTSM00355140152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MMSNDGLSCS MRGGLTLIQD PKNPSTNINH PNPNPNSNLD VSSANKRKRN LPGNPDPNAE  60
VIALSPKSLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNNKE VIKKKVYICP  120
EKSCVHHDPS RALGDLTGVK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK  180
CDCGTLFSRK DSFITHRAFC DALAEESTRF TSIQTAVNLN NLRNQLINGG ISTNLQQQQQ  240
QMSGNISQLL GLGSLDPSNQ LNLDHGQKSR LPLWLHHDNS NYGNPNDFLS TPSTTTSTLA  300
HELVQVAPHT NTLGSSSSHN NNNNNNNNQW FVNDDGGDAI ITTSSSMPRV LKEEEENKTL  360
SPMYYNNSHM SATALLQKAA QVGSTRSNNN SPLFSNQFGL MTSSSLNMMN NSSSSSASNV  420
AIHENVQGNN GLLIGATNST TFVANNANTL MMMQDKGKQG NLTRDFLGVG RNEKRLFLQQ  480
THEMAKFENN NNNNSRIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35148213368Zinc finger protein JACKDAW
5b3h_F2e-35148213368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057222.10.0zinc finger protein BALDIBIS
TrEMBLM1AEC30.0M1AEC3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000209450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-104C2H2-like zinc finger protein