PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g027460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 410aa MW: 46562.9 Da PI: 8.6745 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.8 | 1e-49 | 40 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrF Ptdeel+++yLkkkveg++ + evi+ev+i k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v Sopen11g027460.1 40 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPgKSIVQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKERNV 131 579************************777.99***************878888999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++ +g+k+tLvf+ grapkg++t+W+mhey + Sopen11g027460.1 132 KS-GTNIIGTKRTLVFHIGRAPKGQRTQWIMHEYCM 166 **.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-56 | 37 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.679 | 40 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-27 | 42 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEDEDLLGCN SEKKNGEIIE KTKISNSNGV EISVATASTM FPGFRFCPTD EELISYYLKK 60 KVEGSDKCVE VISEVEIWKH EPWDLPGKSI VQSDNEWFFF SPRGRKYPNG SQSKRATESG 120 YWKATGKERN VKSGTNIIGT KRTLVFHIGR APKGQRTQWI MHEYCMTANP LYQDSMVVCR 180 LRKNNEFHLN DTPGNQRNHL AVTNGTVDLS RAVQLNGLGL INGGECCSKE ASSSFSSHSV 240 EQIESGSESD KLNKELPQHH SSSHWKDCDE EDCFADIMKD DIIKLDDSSY KAKHNLLPTI 300 TRKLESSTKS PTSQEAQNPM SNRLPFQGTA NRRLKLQTEK VPRGVERFEL HEANKKNIHA 360 RGISRRFINI TPVKRMKQWS IPLLLISLML LIVLLCLFGV PQQVKWHYSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-44 | 31 | 183 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-44 | 31 | 183 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-44 | 31 | 183 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-44 | 31 | 183 | 8 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swm_B | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swm_C | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swm_D | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swp_A | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swp_B | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swp_C | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
3swp_D | 9e-44 | 31 | 183 | 11 | 167 | NAC domain-containing protein 19 |
4dul_A | 9e-44 | 31 | 183 | 8 | 164 | NAC domain-containing protein 19 |
4dul_B | 9e-44 | 31 | 183 | 8 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057146.1 | 0.0 | NAC domain-containing protein 40-like | ||||
TrEMBL | A0A3Q7JPF0 | 0.0 | A0A3Q7JPF0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 2e-77 | NTM1-like 8 |