![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen11g027340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 23593.8 Da PI: 9.7214 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84 | 3.1e-26 | 4 | 77 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++w+fF++r++++a+g r+ r+t+ gyWkatg+ v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Sopen11g027340.1 4 REQWFFFVPRQEREARGGRPCRTTNCGYWKATGSPSYVYSSNNKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRA 77 579*********************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.786 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-29 | 2 | 101 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-12 | 7 | 76 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MGDREQWFFF VPRQEREARG GRPCRTTNCG YWKATGSPSY VYSSNNKVIG VKKSMVFYKG 60 KAPTGKKTKW KMNEYRAIQE EVNSTLSIPK LRHEMSLCRI YVISGSFRAF DRRPIAPTIT 120 REPSKSIINQ GGISMENVTK MEAISSPDEN FFMEEQDYVN LNHNDQIPII NQEININSHN 180 NKRVKSNLHD ETLISGWEQF NWM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-19 | 1 | 101 | 68 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-19 | 1 | 101 | 68 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-19 | 1 | 101 | 68 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-19 | 1 | 101 | 68 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 1 | 101 | 71 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-19 | 1 | 101 | 68 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-19 | 1 | 101 | 68 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057943.1 | 1e-150 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 5e-58 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3Q7IZW1 | 1e-144 | A0A3Q7IZW1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068620.1.1 | 1e-145 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-60 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|