PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g027090.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 454aa MW: 50754.8 Da PI: 6.9286

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g027090.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3.1e-10	150	189	4	40
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 k rr+++NReAAr+sR+RKka++++Le+ + ++Le+ Sopen11g027090.1 150 AKTLRRLAQNREAARKSRLRKKAYVQQLETsrmRLAQLEQ 189 6889************************983334444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-8	147	223	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-7	148	194	No hit	No description
PROSITE profile	PS50217	9.255	149	193	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-7	150	190	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-6	151	193	No hit	No description
CDD	cd14708	4.04E-22	151	203	No hit	No description
PROSITE pattern	PS00036	0	154	169	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-26	231	306	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MESQRIGDTT STLSIDHDMT YNTSFMYHST LNNNNQEPST FDFGELEEAI VLQGVKMNND 60 DSFKSSLYGA GINRPAATLE MFPSWPTKVH HTPRGSSKSI GGEQSSDSDS ALNTTISSRG 120 EANVELESPS KSNYAKRKGA GSNSDRVTDA KTLRRLAQNR EAARKSRLRK KAYVQQLETS 180 RMRLAQLEQE LQRARSQGIF MGGGSTGPNI SSGASMFDME YSRWLDDDQR QICELRTALQ 240 AHLGDGELRI IVDAYIAHYD HIFLLKGVVA KSDLFHLLTG IWASPAERGF LWLGGFKPSD 300 LIKMLITQLD PLTQQQIVGI YSLQQSSQQA EEALSQGLEQ LKQSLIETIA TCSVNDGMHH 360 MAIALGKLAN LESFVHQADN LRQQTIHQLH RILTIRQSAR CFMMIGEYYG RLRALSSLWT 420 SRPRETMVAD DNSCQTTSEL QMIQASQHHX EAKI

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MESQRIGDTT STLSIDHDMT YNTSFMYHST LNNNNQEPST FDFGELEEAI VLQGVKMNND  60
DSFKSSLYGA GINRPAATLE MFPSWPTKVH HTPRGSSKSI GGEQSSDSDS ALNTTISSRG  120
EANVELESPS KSNYAKRKGA GSNSDRVTDA KTLRRLAQNR EAARKSRLRK KAYVQQLETS  180
RMRLAQLEQE LQRARSQGIF MGGGSTGPNI SSGASMFDME YSRWLDDDQR QICELRTALQ  240
AHLGDGELRI IVDAYIAHYD HIFLLKGVVA KSDLFHLLTG IWASPAERGF LWLGGFKPSD  300
LIKMLITQLD PLTQQQIVGI YSLQQSSQQA EEALSQGLEQ LKQSLIETIA TCSVNDGMHH  360
MAIALGKLAN LESFVHQADN LRQQTIHQLH RILTIRQSAR CFMMIGEYYG RLRALSSLWT  420
SRPRETMVAD DNSCQTTSEL QMIQASQHHX EAKI

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-150	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015057833.1	0.0	transcription factor TGA9-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3Q7IZ90	0.0	A0A3Q7IZ90_SOLLC; Uncharacterized protein
STRING	Solyc11g068370.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-175	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]