PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g026170.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 385aa    MW: 43571 Da    PI: 8.6735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g026170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07229251123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C++Cgk F+r  nL+ H+r H
  Sopen11g026170.1 229 HYCQICGKGFKRDANLRMHMRAH 251
                       68*******************99 PP
2zf-C2H212.20.00055324347123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ C+ ksFs  s+L++H + +
  Sopen11g026170.1 324 YVCKRCNkKSFSVLSDLRTHEKHC 347
                       9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.54E-6228253No hitNo description
SMARTSM003550.0028229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632229256IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-6229255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SMARTSM0035572286319IPR015880Zinc finger, C2H2-like
SMARTSM0035518324346IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIQGTSSSAN NPQNIPLYSS NHHHNNNIQE DIFSSSSSYQ QNSFLFNLSL LKEKVHQVQS  60
LATMFITPDN QTIIHPPPES IYMIIANMGT LIQEIITTSS SLMFSCQKIV LDSTSLSQNS  120
SRYREPSQND VGHGQGQGQG QVDHLLQDYD WYVDNYNSNC NTHEDNKNHV TSSSTIIASS  180
TISHDNYYSK EFGKKELLLS TSKGKVVIEE NNYDIVELDA SDLLAKYTHY CQICGKGFKR  240
DANLRMHMRA HGDEYKSSAA LSNPMKRIND LTSDGSLKSS SNTIKYSCPQ EGCRWNKKHA  300
KFQPLKSMVC VKNHYKRSHC PKMYVCKRCN KKSFSVLSDL RTHEKHCGDL KWQCSCGTTF  360
SRKDKLMGHV SLFVGHTPLI KQSAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057951.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-104STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3Q7IYQ10.0A0A3Q7IYQ1_SOLLC; Uncharacterized protein
STRINGSolyc11g066420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-89C2H2 family protein