PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopen11g026150.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 311aa MW: 33453.1 Da PI: 8.2205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g026150.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Sopen11g026150.1 138 YECKTCNRTFNSFQALGGHRASH 160 99**********99999998887 PP
2	zf-C2H2	13.6	0.0002	229	251	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Sopen11g026150.1 229 HECSICGSEFSSGQALGGHMRRH 251 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.6E-13	137	162	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.34E-9	137	160	No hit	No description
SMART	SM00355	0.065	138	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.907	138	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.34E-9	224	251	No hit	No description
SMART	SM00355	0.02	229	251	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	8.4E-12	229	253	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.951	229	256	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	231	251	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEVCQNFSER RSCAFKGKRT KRSRPLSPLN TAGTTTTTTT ITTTTTSSSI ACGSNDGSRG 60 VDGGGGDFFY NSPTTSTTQI SRLSTSEEDE DMANCLILLA QSGCGHKVEQ VKKEKINNRK 120 FAEIANSSTT GKAGFFVYEC KTCNRTFNSF QALGGHRASH KKPKTILEDK KSVTVNTDST 180 ATATATATAT ATAGAGDGAG HDNLHDQGQE RLNKISNTTI QSNIKTKIHE CSICGSEFSS 240 GQALGGHMRR HRQPPTTTMI NASNVSESSH DEKSRRTVLC LDLNLPAPVE DDHKFEQSLV 300 FSAAPLVDCY Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015057800.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A3Q7IZ65	0.0	A0A3Q7IZ65_SOLLC; Uncharacterized protein
STRING	Solyc11g066400.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-49	C2H2 family protein