PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g023410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 441aa    MW: 48615.9 Da    PI: 6.8431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g023410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12378423655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  Sopen11g023410.1 378 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 423
                       689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15375433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-11376427No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14377433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9378423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDHSRVEQQP ITSGLTRYRS APSSYFSTLL TTTTPVTGGG CGYARDDFSN LPNSTASSSS  60
TDIEQVFARF VASIGNSNSN SGNFPTNQPI HENPTSNMNV RSDFVVPKQE ITPRLVRHRS  120
SDYSLVSNYQ NQNQHFISPV KKEPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV  180
FANSASLTPG SSSGGGGNSN LTRYNSSPAG FFAQINIENE YGAIRGIGSY ETGTNAAAET  240
SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK STGNEHKNDE HCITDFPMPS  300
WEDSHILSDD FLKTEDIEIE PISNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD  360
SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK  420
ELEKQVKILA ERRAKCTCIN K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056693.10.0transcription factor bHLH81-like
TrEMBLA0A3Q7JMX00.0A0A3Q7JMX0_SOLLC; Uncharacterized protein
STRINGSolyc11g056650.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-48bHLH family protein