PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g012490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 1253aa MW: 143267 Da PI: 8.4305 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.8 | 4e-30 | 1039 | 1089 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyeys+ Sopen11g012490.1 1039 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYSN 1089 79***********************************************95 PP | |||||||
2 | K-box | 96.2 | 5.1e-32 | 1109 | 1203 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++e +a+ +qqe++kL+++i+++q+++Rhl+Ge+L+sL+++eL+qLe++Le+++++iRskK+e +l+++e+l k+e +l++en Lr+ Sopen11g012490.1 1109 AYTTQELNAQFYQQESKKLRQQIQMIQNTNRHLVGEGLTSLNVRELKQLENRLERGITRIRSKKHEAILAETEDLHKREIQLEQENAFLRS 1199 33478999*********************************************************************************** PP K-box 97 klee 100 k++e Sopen11g012490.1 1200 KIAE 1203 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00303 | 1.63E-15 | 313 | 407 | No hit | No description |
SuperFamily | SSF56672 | 2.52E-33 | 603 | 729 | No hit | No description |
CDD | cd09274 | 1.16E-43 | 628 | 729 | No hit | No description |
Gene3D | G3DSA:3.30.420.10 | 5.9E-6 | 849 | 889 | IPR012337 | Ribonuclease H-like domain |
SMART | SM00432 | 3.6E-41 | 1031 | 1090 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.852 | 1031 | 1091 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-32 | 1032 | 1108 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.90E-42 | 1032 | 1108 | No hit | No description |
PRINTS | PR00404 | 1.2E-30 | 1033 | 1053 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 1033 | 1087 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-25 | 1040 | 1087 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 1053 | 1068 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 1068 | 1089 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-24 | 1113 | 1201 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.404 | 1117 | 1207 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1253 aa Download sequence Send to blast |
MPNTRSRGIP VIEPDPELDR TLRRMNQNLG IQGDEVDRQM PPLVDARDLV LPDICGEGLP 60 SEDPHAHIAK LRDAFLARYY PVSKKLYHKD RVNNFVALPR ESVSSSWDRF TSFLRSVPNH 120 RIDDESLKEY FYWGQDDNNK AVLDIIAGGS YGECPYAEIA EKLEKISRNN KAWSTRKSDT 180 WRNTFAVQSA HNSVVDDLCE EMAQMRTELG LVLKHVVGGA EKENWHQGQG NQGRNYGNYN 240 LEGHYVRYGN YNRNNNFNQE ALEQMPRYAK FKKDLVTKKR SVTFKDHDRM QHCSAMATRS 300 LVQKKENPGA FHIPCTIGLL HFAKALCDLG ASINIMPLSI YKKLGLGNPN PTTMQLLMAD 360 RTVKRPIGIL HDVLVKVESF IFPADFVILD CEANFEVTII LGRPFLATGR ALVAMEKGVE 420 ESSEVRIEER LGVEALATVI MNFDGDGIDE YESLVAALDR GNVRFKPKKF ELDMQYRESP 480 PAKPSIEEAP KLELKPLPPH LKYVFLGKDD TLSVNITSDL NVHQVESLVK VLKRFKRAIM 540 WTIVDIIGIP PGIYSHKIQL MPDHKPSIEH QRRQNPPMKE VAKKEIIKWL DARVIYPIAD 600 SSSAFGELKE KLVSAPIIIS TDWSKSFEVM CDASGITLGV VLGQRRDKIL HPIYYASKAL 660 NEAQKNYTVT EQELIAVVFP FEKFRSYLLG TKVIVHTDHS ALRYLMAKKY AKPRLIRWVL 720 LLQEFDFEIL RIIWLVISSH RTCPFIKEEK FMYDVKKFFW DEPYLYRSCA NGIIRRCVPE 780 VEMLSVLEAC HSLPVGGHHN GILTADKILQ CGYYWSTIHQ DAHEFAKACD RCQRDGGISR 840 KQELPLNPML VIELFDVWGI DFMGPFVSSQ GMKYILVAFD YVSKWKIGLQ NSLTDPSTDR 900 HAYDGPSQAS VVSSSRVVEA EKSTTDGAVI VERGTTEGDV DAEGTTEGVQ TTEEEICPKE 960 NAEDLSRNCR SDHLRSLQRS VVTVTVRRWH RSEKKIAAKG SWGTTSLLEK TRRKIAYLIH 1020 STHSDRSIRL MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFST 1080 RGRLYEYSNN NVKATIERYK KATAETSSAY TTQELNAQFY QQESKKLRQQ IQMIQNTNRH 1140 LVGEGLTSLN VRELKQLENR LERGITRIRS KKHEAILAET EDLHKREIQL EQENAFLRSK 1200 IAENERLQEL SMMPSGGEEY NAFQQYLARN MLQLNMMETA LPSYDPLSPD HKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-19 | 1031 | 1099 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY098736 | 0.0 | AY098736.2 Lycopersicon esculentum TAGL11 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z6N9K9 | 1e-171 | A0A2Z6N9K9_TRISU; Uncharacterized protein | ||||
STRING | XP_009791098.1 | 1e-174 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-89 | MIKC_MADS family protein |